[seqfan] TOPIC: OEIS XML

David Wilson davidwwilson at comcast.net
Fri Apr 22 16:06:31 CEST 2005


I have no clue what an RSS feed is.  However, supposing it has the
effect you describe, it seems like a reasonable project.

Is there anyone who can maintain web-accessible documents (e.g,
requirements and design specs) for this project?

----- Original Message ----- 
From: "Chuck Seggelin" <seqfan at plastereddragon.com>
To: <ham>; "David Wilson" <davidwwilson at comcast.net>; 
<Antti.Karttunen at iki.fi>
Cc: "Sequence Fan Mailing List" <seqfan at ext.jussieu.fr>
Sent: Friday, April 22, 2005 9:20 AM
Subject: Re: [seqfan] TOPIC: OEIS XML


> This all sounds good to me.  XML is far more portable.  I'd like to add 
> only one suggestion for consideration:
>
> If the OEIS went to XML format, it would probably be a very small jump to 
> give it an RSS feed.  That way subscribers could be automatically notified 
> whenever the OEIS DB was updated, and would be able to see exactly what 
> updates happened using a news aggregator like bloglines or what have you.
>
>                -- Chuck
>
> ----- Original Message ----- 
> From: "David Wilson" <davidwwilson at comcast.net>
> To: "Antti Karttunen" <Antti.Karttunen at iki.fi>
> Cc: "Sequence Fans" <seqfan at ext.jussieu.fr>
> Sent: Friday, April 22, 2005 5:46 AM
> Subject: [seqfan] Re: TOPIC: OEIS XML
>
>
>> From now on, I will use TDB to stand for the current text EIS database
>> and XDB for the proposed XML EIS database.
>>
>> I have looked over your tentative requirements from an earlier message.
>> Many of your requirements are stated in terms of possible XML
>> solutions, I have tried to strip these implementation details or 
>> solutions
>> and summarize the requirements:
>>
>> 1.    The XDB should be easier for NJAS to maintain than the TDB.
>> 2.    The transition from TDB to XDB should be minimally painful.
>> 3.    The XDB should be normalized.
>> 4.    The XDB should support something akin to source control,
>>    tracking contributors and modification times per datum.
>> 5.    The XDB should distinguish between definitions, identities, and
>>    conjectures.
>> 5a.   The XDB should track contributors and sources per datum.
>> 6.     The XDB should support a simple language for defining sequences
>>    in terms of other sequences, common sequence classes, and common
>>    operations on sequences.
>> 7.     The XDB should support equations such as those provided for
>>    MathML or TeX.
>> 8.    The XDB data organization should improve on that of the TDB.
>> 9.    The XDB should support data in formats transitional between the
>>    TDB format and the XDB format.
>>
>> I would categorize these requirements as follows, and add some of my
>> own requirements:
>>
>> I.  Implementation requirements:
>>    A.  Migration from TDB to XDB should be as seamless as possible.
>>
>> I.  Functional requirements:
>>    A.  The XDB must support all current functions of the TDB.
>>    B.  The XDB should support some form of source control, with
>>        automatic tracking of modifications, including submitter,
>>        data/time, and source documents associated with the modification.
>>    C.  The XDB should support a simple, broad sequence definition
>>        language.
>>    D.  The XDB should support equations similar to MathML or
>>        TeX equations.
>>
>> II.  Format requirements:
>>    A.  The XDB should support data formats that are transitional
>>        between the TDB and XDB.
>>    B.  The XDB data model should reflect as closely as is practical
>>        the perceived organization of the data.
>>    C.  The XDB should be normalized.
>>
>> This requirements list is a prototype.  However, even with this much
>> data, I can safely say the that project must be implemented in stages,
>> with each stage implementing a chewable number of features.  As a
>> software engineer, my approach to this project would be approximately
>> as follows:
>>
>> 1.  Define an API for the OEIS database.  This involves surveying the
>>    current functionality of the TDB.  We need to know everything that
>>    NJAS, editors, the site, and users do with the database, since we
>>    need to maintain all those functions in the TDB.  For instance, once
>>    we have transistioned to the TDB, NJAS will still want to create and
>>    tweak sequences, the site will still want to look up sequences by the
>>    existing criteria, and users will still want to be able to download
>>    sections of the database.  Loss of any significant function will
>>    conflict with the requirement of seamless migration, and will be
>>    disruptive to the operation of the OEIS.
>>
>> 2.  Once the API is defined, design a transitional XDB whose internal
>>    organization is faithful to the current TDB.  I would suggest that
>>    TDB-style tags be in their own namespace so that they will not
>>    conflict with XDB-style flags later on.
>>
>> 3.  Implement the API on the transitional XDB containing only
>>    TDB-style tags.  This will prove that the XDB is complete datawise
>>    and provide a test bed for future XDB development.
>>
>> 4.  Design the XDB-style tags and elements.  Survey the TDB data and
>>    proposed enhancements.  XDB-style tags and elements should be in
>>    their own name space.
>>
>> 5.  Implement the XDB-style tags.  As each tag or group of related
>>    XDB-style tags is implemented, the API should be modified to deal
>>    with the XDB-style tags.  It may be expedient at this point to convert
>>    TDB-style tags to XDB-style tags, or else teach the API to deal with
>>    mixed tags and postpone the conversion.  When the API is fully
>>    functional, we have effectively replaced the TDB, and now have
>>    a database with XML functionality, to which more-or-less seamless
>>    enhancements can be made.
>>
>> 6.  Create source control tools for the TDB.  These tools should
>>   allow users to create new sequences or check out existing sequences
>>   for modification, submit them for review, assign them to a reviewer,
>>   guide the reviewer through the review process and approve the
>>   sequence, and accept the sequence into the database (or at any
>>   point reject the sequence, which will then not enter the database).
>>   When the sequence is accepted into the database, the contributor
>>   and date/time are added to the modified lines.
>>
>> 7.  Think about enhancements, such as MathML equations or
>>   simple sequence descriptions.
>>
>> ----- Original Message ----- 
>> From: "Antti Karttunen" <Antti.Karttunen at iki.fi>
>> To: <ham>; "David Wilson" <davidwwilson at comcast.net>; "Hugo van der 
>> Sanden" <hv at crypt.org>; "Gerald McGarvey" <Gerald.McGarvey at comcast.net>; 
>> "Ralf Stephan" <ralf at ark.in-berlin.de>; "Thomas Baruchel" 
>> <baruchel at laposte.net>; "Marc LeBrun" <mlb at fxpt.com>; "Antti Karttunen" 
>> <Antti.Karttunen at iki.fi>
>> Sent: Thursday, April 21, 2005 4:21 PM
>> Subject: Re: TOPIC: OEIS XML
>>
>>
>>> David Wilson wrote:
>>>
>>>> To begin, I think the conversion of the OEIS into XML is a great
>>>> idea.  I would, however, like to understand the goal of the project.
>>>> Are we merely trying to emulate the current sequence schema in
>>>> XML, or are we going to develop a new schema for the XML
>>>> database, that is, the way the sequences SHOULD be structured?
>>>>
>>>> If the former, the whole project seems pretty cut and dried, and
>>>> you should need no participation beyond the techical people.  If
>>>> the latter, I suggest that you start putting together requirements
>>>> and/or design documents that can be reviewed and criticized by
>>>> us XML illiterates.
>>>
>>>
>>> Here are some of my thoughts.
>>>
>>> First of all, I'm here thinking about the full-scale replacement
>>> of the current implementation of the OEIS-system, based
>>> on the data stored in RDBMS or other database which
>>> can give an XML-view to its data. This would involve
>>> also all the operations Neil has to do for the maintenance
>>> of OEIS, currently invisible to us.
>>>
>>> [list of requirements omitted]
>>
>>
> 






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